Experiment ID
281,282 (pooled)
Pathogen
Contains Preferred Model
1
Reference
Host type
# of Doses
12.00
Μodel
k
1.05E-04
LD50/ID50
6.61E+03
Dose Units
Response
Agent Strain
ATCC 19660
Exposure Route
Experiment Dataset
Description: 

mice (5day old, day 1-21 pooled) /  Pseudomonas aeruginosa [1]

Dose Dead Survived Total
2.5 0 13 13
2.5 0 13 13
25 0 14 14
25 0 14 14
250 0 12 12
250 0 12 12
2500 4 13 17
2500 4 13 17
25000 13 2 15
25000 15 0 15
250000 17 0 17
250000 17 0 17

 

Goodness of fit and model selection
Model Deviance Δ Degrees 
of freedom
χ20.95,1 
p-value
χ20.95,m-k 
p-value
Exponential

4.36 

 -0.000549

  3.84 
1
19.7
0.958
Beta Poisson

4.36

10 18.3 
0.93
Exponential is preferred to beta-Poisson; cannot reject good fit for exponential.

 

Optimized k parameter for the exponential model, from 500 bootstrap iterations
Parameter MLE estimate Percentiles
0.5% 2.5% 5% 95% 97.5% 99.5%
k 1.05E-04 6.84E-05 7.49E-05 7.84E-05 1.48E-04 1.57E-04 1.73E-04
ID50/LD50/ETC* 6.61E+03 4.01E+03 4.40E+03 4.68E+03 8.84E+03 9.26E+03 1.01E+04
*Not a parameter of the exponential model; however, it facilitates comparison with other models.

 

 

 

Parameter histogram for exponential model (uncertainty of the parameter)

Exponential model plot, with confidence bounds around optimized model


References