Difference between revisions of "Sandbox"

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Risk Characterization <br />
 
Risk Characterization <br />
  
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{{#ask:[[Category:Agent Overview]][[Category:Bacterium]]|format=Template|Template=Template:Display pathogen data|limit=500|?Pathogen}}
+
{{#show: Category:Agent Overview|?}}
  
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{{#show: Burkholderia|?Pathogen}}
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{{#ask:[[Category:Agent Overview]][[Category:Bacterium]]|format=template|Template=Template:Display pathogen data|limit=500}}
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{{#show: Burkholderia|?}}
  
 
==Testing R-formatted template content==
 
==Testing R-formatted template content==

Revision as of 21:24, 30 October 2012

Welcome to the Sandbox

You can use this page to test out anything wiki related before putting up in the wiki. Note all content on this page will be periodically deleted!


Use of CAMRA Wiki

CAMRA researchers welcome submissions to the Wiki. Key quantitative information is needed to undertake a QMRA. This begins with problem formulation and includes articulation of the venue, hazards, exposure pathways and necessary data. We have developed forms or will be developing forms which can be used to fill in key information regarding.

HAZ ID
Dose-Response
Exposure Assessment
Risk Characterization

Agent Overview


Bacillus anthracis Bacillus anthracis
The part "|Bacillus anthracis" of the query was not understood. Results might not be as expected.
Burkholderia Burkholderia
The part "|Burkholderia" of the query was not understood. Results might not be as expected.
Campylobacter jejuni Campylobacter jejuni
The part "|Campylobacter jejuni" of the query was not understood. Results might not be as expected.
Coxiella burnetii Coxiella burnetii
The part "|Coxiella burnetii" of the query was not understood. Results might not be as expected.
Cyanobacteria Cyanobacteria
The part "|Cyanobacteria" of the query was not understood. Results might not be as expected.
Escherichia coli Escherichia coli
The part "|Escherichia coli" of the query was not understood. Results might not be as expected.
Francisella tularensis Francisella tularensis
The part "|Francisella tularensis" of the query was not understood. Results might not be as expected.
Legionella pneumophila Legionella pneumophila
The part "|Legionella pneumophila" of the query was not understood. Results might not be as expected.
Listeria monocytogenes Listeria monocytogenes
The part "|Listeria monocytogenes" of the query was not understood. Results might not be as expected.
Mycobacterium avium Mycobacterium avium
The part "|Mycobacterium avium" of the query was not understood. Results might not be as expected.
Pseudomonas aeruginosa Pseudomonas aeruginosa
The part "|Pseudomonas aeruginosa" of the query was not understood. Results might not be as expected.
Rickettsia rickettsii Rickettsia rickettsii
The part "|Rickettsia rickettsii" of the query was not understood. Results might not be as expected.
Salmonella Salmonella
The part "|Salmonella" of the query was not understood. Results might not be as expected.
Shigella sp. Shigella sp.
The part "|Shigella sp." of the query was not understood. Results might not be as expected.
Staphylococcus ayreus Staphylococcus ayreus
The part "|Staphylococcus ayreus" of the query was not understood. Results might not be as expected.
Variola major Variola major
The part "|Variola major" of the query was not understood. Results might not be as expected.
Vibrio cholerae Vibrio cholerae
The part "|Vibrio cholerae" of the query was not understood. Results might not be as expected.
Yersinia pestis Yersinia pestis
The part "|Yersinia pestis" of the query was not understood. Results might not be as expected.


Burkholderia

Testing R-formatted template content

TITLE [1]
Dose MILD TO SEVERE DIARRHEA NOT MILD TO SEVERE DIARRHEA Total
1E+04 0 5 5
1E+06 1 8 9
1E+08 3 2 5


TITLE [2]
Dose MILD TO SEVERE DIARRHEA NOT MILD TO SEVERE DIARRHEA Total
1E+04 0 5 5
1E+06 1 8 9
1E+08 3 2 5


TITLE [1]
Dose MILD TO SEVERE DIARRHEA NOT MILD TO SEVERE DIARRHEA Total
1E+04 0 5 5
1E+06 1 8 9
1E+08 3 2 5

References

  1. ↑ 1.0 1.1 Short M. 2002. Blah blah Cite error: Invalid <ref> tag; name "SHORT_2002" defined multiple times with different content
  2. ↑ Shorty Q. 2003. Blah blah!
Goodness of fit and model selection
Model Deviance Δ Degrees
of freedom		 χ20.95,1
p-value		 χ20.95,m-k
p-value
Exponential 2.99 2.98 2 3.84
0.0845 		5.99
0.224
Beta Poisson 0.0156 1 3.84
0.901
Exponential is preferred to beta-Poisson; cannot reject good fit for exponential.
Optimized parameters for the beta-Poisson model, from 500 bootstrap iterations
Parameter MLE estimate Percentiles
0.5% 2.5% 5% 95% 97.5% 99.5%
α 2.13E-01 1.26E-03 3.22E-02 3.22E-02 2.66E+02 3.62E+02 1.25E+03
N50 3.41E+07 1.91E+06 2.78E+06 5.87E+06 1.01E+14 1.01E+14 9.22E+140
Optimized k parameter and N50 for the exponential model, from 500 bootstrap iterations
Parameter MLE estimate Percentiles
0.5% 2.5% 5% 95% 97.5% 99.5%
k 2.13E-01 2.19E-09 2.19E-09 4.40E-09 4.03E-08 1.17E-07 2.50E-07
{{{N50type}}}* 3.41E+07 2.78E+06 5.92E+06 1.72E+07 1.58E+08 3.17E+08 3.17E+08
*Not a parameter of the exponential model; however, it facilitates comparison with other models.


TITLE [1]
Dose death not death Total
100 1 3 4
1000 3 1 4
1E+04 4 0 4
1E+05 4 0 4
Goodness of fit and model selection
Model Deviance Δ Degrees
of freedom		 χ20.95,1
p-value		 χ20.95,m-k
p-value
Exponential 0.338 0.195 3 3.84
0.658 		7.81
0.953
Beta Poisson 0.142 2 5.99
0.931
Exponential is preferred to beta-Poisson; cannot reject good fit for exponential.
Optimized k parameter and N50 for the exponential model, from 500 bootstrap iterations
Parameter MLE estimate Percentiles
0.5% 2.5% 5% 95% 97.5% 99.5%
k 1.82E+00 3.62E-04 5.50E-04 6.22E-04 7.02E-03 7.02E-03 7.02E-03
{{{N50type}}}* 3.38E+02 9.87E+01 9.87E+01 9.87E+01 1.11E+03 1.26E+03 1.92E+03
*Not a parameter of the exponential model; however, it facilitates comparison with other models.
  1. ↑ ADDFULLREFERENCEHERE
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